Basic Information
VIS ID
TVIS30016480
Fusion event
HIV-LOC105378120 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
167387798/166974310 (Hg38)
End
167387762/166974310 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378120
Nearest miRNA
hsa-mir-10398/Upstream/464877; hsa-mir-3939/Downstream/23497;
Nearest TSS
ENST00000381078/Upstream/17119; ENST00000476078/Downstream/24755;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/17415, chr6-CpG: 188/Downstream/23799
Nearby gene
RNASET2(No orient, 17721)
Upstream sequence
gcctacagaatcgtgagccaattaaacctcttttcttgccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgtggagggtggatcac
Downstream sequence
gaggtcaggggtttgaaaccagcctggccaacatggtgaaaccctgtttctactaaaaatacaaaaattagccgggtgtggtggtgggcacctgtagttc
Target sequence
tcccagcactttgggaggccgtggagggtggatcac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate