VISDB Viral Integration Site DataBase

VIS ID

TVIS30016484

Fusion event

HIV-RNF216 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p22.1

Reference genome

Start

End

5804938/5765084 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-455-3p ; hsa-mir-320a ; hsa-mir-376a-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-5089-5p ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-1911-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-7851-3p ; hsa-mir-619-3p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-1178-3p ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3140-3p ; hsa-mir-3135b ; hsa-mir-3934-3p ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-4662a-3p

Nearest miRNA

hsa-mir-339/Upstream/53174; hsa-mir-10399/Downstream/1301880;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/156731, chr7-CpG: 91/Downstream/15929

Upstream sequence

gcttgagcccatgagttccaagtttacagtaagctatgaccaacccactgcactccagcctaggaaacaaagcaagactctcttaaaaaaaaaaaaaaaa

Downstream sequence

aaattagctgggtgtggtagcaggtgggaatctgtaatcccagctacttgggaggctgaggtaagagaattgcttcagcttggaaggtggaggttgcagt

Target sequence

gtaaggatgggataaaacaatttttacacattcaaagactaagagagtttacctcccacagatactcaaagagctattaaaaaaatgaacttcaAgaccgggcatggtggctcacgcctttaatcccaggacttcgggaggtcgaggccagtggattgcttaaggtcaggagttgagaccagcctgggcaacacagtgaggactatctatactgaaaatacaa