Basic Information
VIS ID
TVIS30016488
Fusion event
HIV-chr7 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
7787147/7747516 (Hg38)
End
7787120/7747516 (Hg38)
Orient
-
Location type
Intronic
Nearest miRNA
hsa-mir-339/Upstream/680471; hsa-mir-10399/Downstream/10379704;
Nearest TSS
ENST00000635602/Upstream/28909; ENST00000406829/Downstream/24845;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/106468, chr7-CpG: 81/Downstream/221710
Nearby gene
RPL23AP51(-4939) ;
Upstream sequence
catcttggttcatggatgaggaaaaccaagactcaaagatatgcagtgacttggtcaaggtcacagagtagtaGAGGATGGCTCTCTTTCCATTACAGTG
Downstream sequence
ACAGTCAGAAAGCGTCAAATCTTAGGTTATCATGACACTTAGTAATTATGAAGTATATTTTTTCCAAGAAATAATAAGCCTTTTAGGCAATTGAAACTGC
Target sequence
GAGGATGGCTCTCTTTCCATTACAGTG
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate