VISDB Viral Integration Site DataBase

VIS ID

TVIS30016491

Fusion event

HIV-PHF14 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p21.3

Reference genome

Start

End

11184536/11144727 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-128-3p ; hsa-mir-122-5p ; hsa-mir-183-5p ; hsa-mir-5585-3p ; hsa-mir-4474-5p ; hsa-mir-4635 ; hsa-mir-3613-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p

Nearest miRNA

hsa-mir-339/Upstream/4077682; hsa-mir-10399/Downstream/6982493;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/170466, chr7-CpG: 25/Downstream/687054

Upstream sequence

CTAATGTTCCTAACGTttttatatcactgtaggttgactatggttaacagtaatttagtgtatattcttaaaaagttagaagagaggattttgaatgttc

Downstream sequence

cagggagtagaattatggttgctaggaggtaaggaaaggagagaatgaggtattttgtgtggtataaacgggaacagagttttagttttataagataggg

Target sequence

gtaacacaaatgataaatgtttgtggtgatgTGGGGGGAAGaaaaggaaggaaaatctgagatgtactacaacatatatgaaccttaagaacattttgccaagtaaaatagccagtcacaaaaagacagatactgtgattacacttgtaagaagtagtaagagtagtaaaaaatcatagaga