VISDB Viral Integration Site DataBase

VIS ID

TVIS30016493

Fusion event

HIV-SNX13 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p21.1

Reference genome

Start

End

17880457/17841048 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-136-5p ; hsa-mir-1226-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-124-3p ; hsa-mir-506-3p

Nearest miRNA

hsa-mir-339/Upstream/10774003; hsa-mir-10399/Downstream/286172;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/541571, chr7-CpG: 82/Downstream/99103

Upstream sequence

gtccattccagctcttagcacaactgcagctaccattccccactctcagactactagaacaagtagctgtgcatgcactccagaattagcttgtacacag

Downstream sequence

caagtaggaaccagggtggacaaaaaacaacttgtccttcaaatattcggatctaggctctgacagcacactgctgcttctgatcaaagaggtgcagaca

Target sequence

ctccacaacaagtgcaatggcagaatctgatgtaactaatttggaactctggaatctaatgaagatttgcaacatttaagggaaggcttgggaagtaagctttggttaatctcagtccattccagctcttagcacaactgcagctaccattccccactctcagactactagaacaagtagctgtgcatgcactccagaattagcttgtacacag