VISDB Viral Integration Site DataBase

VIS ID

TVIS30016497

Fusion event

HIV-OSBPL3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p15.3

Reference genome

Start

End

24858150/24818796 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-4662a-5p ; hsa-mir-3151-3p ; hsa-mir-6890-3p ; hsa-mir-3163 ; hsa-mir-449b-3p ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-6499-3p ; hsa-mir-539-5p ; hsa-mir-6838-5p ; hsa-mir-4519 ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-548e-5p ; hsa-mir-4712-3p ; hsa-mir-4757-3p ; hsa-mir-4517 ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-1183/Upstream/3347650; hsa-mir-10399/Downstream/1131123;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/60928, chr7-CpG: 134/Downstream/160584

Upstream sequence

catgagggcagatttaagcccagctacatctacaatcacaacaaacggaaatggtttacacaacctacataaaaggcagagaaatgtcaggctgggttac

Downstream sequence

aaagcaagattTGGGAATCCTAGGCCCATGGAAATAGGTAGATTGCTCAGGAAAAGGCTGATGGGGAAGTATGGCCTAGGAGAAGGATGCTAAGGCTGAG

Target sequence

acataaatcctaaagtaacaactttaacaagaaacaaaacaggtaagtatagctaataagctaacaggggagatgaaagagaatgatagaaattattcaatccaaaaggcagagaaagaggaaacggagaacaaagaacagatgtgacaaacagaaaagaaacatcatgagggcagatttaagcccagctacatctacaatcacaacaaacggaaatggtttacacaacctacataaaaggcagagaaatgtcag