Basic Information
VIS ID
TVIS30016501
Fusion event
HIV-ZNRF2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
End
30359698/30320113 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1183/Upstream/30223; hsa-mir-10399/Downstream/2412868;
Upstream sequence
catgtgtgtactacctgtgtgtccgtgagtttatatatttatttaaccacgaattctttgttttgattcatctgttggttgAGTCCTGAGTCTGAGTATT
Downstream sequence
TAAAGATAATACACTTCTTGAGTCCCATTTTTTTCCAAGAGCTCTGAAGACCCCTCTGCCATGTGTCCCAAATAATtatctatatatgttatatatgtag
Target sequence
atctgttggttgAGTCCTGAGTCTGAGTATT
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate