VISDB Viral Integration Site DataBase

VIS ID

TVIS30016502

Fusion event

HIV-NT5C3A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p14.3

Reference genome

Start

End

33074520/33035182 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-122-5p ; hsa-mir-16-5p ; hsa-mir-320a ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-6504-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-144-3p

Nearest miRNA

hsa-mir-1183/Upstream/302105; hsa-mir-10399/Downstream/1905578;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/77203, chr7-CpG: 80/Downstream/27144

Upstream sequence

TTTTCACTGAGTATGAATAATAACACATAGTTGGCGGTTTCACACCCATTTCTTAAAGGTAAGATTACTGCTCTCATTCAGGGCTATAGAAGCTAATAAG

Downstream sequence

GAATGAGttttttttttttttttttttttgagacggaatctcgctctgtcgcccaggctggagtgcagtggcgcaatcttggctcactgcaaccttcgcc

Target sequence

TTATTTTTAATTGTTGTTTTTAAGATTTTATCACTGTGAATATGGAGAACAGATGTAATTTCTTTCCACACATGCAAATAAATATGCCAGTTACACAGTTAAAACACTCACTAACGTAATAGAGTAGATCAATATTTAATGAATGCTTAATCTGGGGTTACTAGGAACTTGACGTTTTCACTGAGTATGAATAATAACACATAGTTGGCGGTTTCACACCCATTTCTTAAAGGTAAGATTACTGCTCTCATTCAG