VISDB Viral Integration Site DataBase

VIS ID

TVIS30016507

Fusion event

HIV-BBS9 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p14.3

Reference genome

Start

End

33230038/33190614 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4709-3p ; hsa-mir-3185 ; hsa-mir-3124-3p ; hsa-mir-676-5p ; hsa-mir-3121-5p ; hsa-mir-1264 ; hsa-mir-6875-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4778-3p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-1248 ; hsa-mir-5088-3p ; hsa-mir-28-3p ; hsa-mir-8084 ; hsa-mir-5582-3p

Nearest miRNA

hsa-mir-1183/Upstream/457537; hsa-mir-10399/Downstream/1750146;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/60983, chr7-CpG: 153/Downstream/713439

Upstream sequence

AGCAAGAATAGGAAGTTGACTGGCTAACGTCACTTGAGCCTTCTCTGTGATCAGATCTGGTTTctctcttttcatctcttgcttccatttcctgggatag

Downstream sequence

gctatttccttctggttacatgatggctatagcagctttaaatctttacttgtcacattctagtccatgtaaaagaggttcttcctttctcgtagaaggc

Target sequence

TGTGGATTTAGATGTACTTTTGTTTTCTTTCCAACCTTGTCTTTGGTAAAACTGAAGACTCCCTTGGTTGCAACTAACAGTTGGCTTAAGCAAGAATAGGAAGTTGACTGGCTAACGTCACTTGAGCCTTCTCTGTGATCAGATCTGGTTTctctcttttcatctcttgcttccatttcctgggatag