VISDB Viral Integration Site DataBase

VIS ID

TVIS30016522

Fusion event

HIV-ADAM22 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q21.12

Reference genome

Start

End

87598973/87970050 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-539-5p ; hsa-mir-451b ; hsa-mir-624-5p ; hsa-mir-5581-3p ; hsa-mir-5701 ; hsa-mir-4716-5p ; hsa-mir-6782-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-3148 ; hsa-mir-33b-3p ; hsa-mir-3692-5p ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-4704-5p ; hsa-mir-515-3p ; hsa-mir-519e-3p ; hsa-mir-5580-5p ; hsa-mir-570-3p ; hsa-mir-6080 ; hsa-mir-6124

Nearest miRNA

hsa-mir-10525/Upstream/12054781; hsa-mir-10399/Downstream/4233965;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/34794, chr7-CpG: 59/Downstream/249638

Upstream sequence

ATACAGACAGAAAACACTAATGTTCTTACATTTATCATACCAATTTACATATAGGTAGACCTGTTGGGTAGAACTCTCTGTTAACAGATGCCATTGTAAT

Downstream sequence

ACAGTTCTGCTTCACAAAATTAATCCCATATCTTGATGTGGCCACAACAAATTCTAGAATGAGAAACCTTCATCTGAAATAGAGATATAGTATCAATCCT

Target sequence

tctagtttattccactggtaaatggaagacctagaattcaaatgtacctcagctctttaaagtttgttctttaaaaattgtgctattttgtTTTGTTTCATTTTGTTTTAAAATGTCCTGTTGCCAGGCACTGTTCTACTTCTTGTAATACTAAATGCAGATGGTTGGATTTCAAGAACAGTTTGGTTTAAAGATAATGTGTAAATTAGATACAATATATAATCAGCTTATGAAAACTGTGGGTGTTACTGAGAT