Basic Information
VIS ID
TVIS30016528
Fusion event
HIV-LOC105375416 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
97087869/97458557 (Hg38)
End
97087816/97458557 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375416
Nearest miRNA
hsa-mir-10525/Upstream/1238801; hsa-mir-10399/Downstream/505101;
Nearest TSS
ENST00000635602/Upstream/315876; ENST00000495916/Downstream/273351;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/340679, chr7-CpG: 137/Downstream/273263
Nearby gene
TAC1(No orient, 273401)
Upstream sequence
CTGCTTTTAAAATCCTCTTTAtagtcttataaaaaaatcgggctgggtatggtggctcatacctgtaatcccagcactctgggaggctgaggtaggtgga
Downstream sequence
tcacttgaagtcaggagttcaagaccagcttaggcaacatgatgaaacccagactctaaaaaaaccacaaaaagttagctgggcatggtggcatgtgcct
Target sequence
tatggtggctcatacctgtaatcccagcactctgggaggctgaggtaggtgga
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate