VISDB Viral Integration Site DataBase

VIS ID

TVIS30016542

Fusion event

HIV-KMT2E integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q22.3

Reference genome

Start

End

104723688/105083442 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1301-3p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-10525/Upstream/2611911; hsa-mir-10399/Downstream/9569903;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/68923, chr7-CpG: 28/Downstream/161160

Upstream sequence

aattagagacactttgatgccctcagtgttgaactcatagggttctgggtggccaggggcattgcccagtatcaaaagacatttaaaaggcaatcccttc

Downstream sequence

ctagctacctgttgtctgacttgagggacaaagcatcaatggtaccaatccagaaaaagggttctcctccaggttttcttgttatacaaccaaaagactg

Target sequence

tctctttcagggttctgttccatagtgttgacattcttttccatagagtactgtgtgtaatgagccttaaaggccattatcactccttgatttagaggctgaattagagacactttgatgccctcagtgttgaactcatagggttctgggtggccaggggcattgcccagtatcaaaagacatttaaaaggcaatcccttc