VISDB Viral Integration Site DataBase

VIS ID

TVIS30016548

Fusion event

HIV-MDFIC integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q31.1

Reference genome

Start

End

114616416/114976565 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-132-3p ; hsa-mir-221-3p ; hsa-mir-376a-2-5p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-3668 ; hsa-mir-3935 ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-5002-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-659-3p ; hsa-mir-487b-5p ; hsa-mir-487a-5p ; hsa-mir-8054 ; hsa-mir-548l ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-497-3p

Nearest miRNA

hsa-mir-10525/Upstream/323110; hsa-mir-10399/Downstream/2043646;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/53790, chr7-CpG: 71/Downstream/1233751

Upstream sequence

AGCAAATTCATCTCTAAATCAAACCATTGCACACCCGTAGAAATAGATCTCCTTTTACAGAGGCTTTGTAGATTTTAGTTATGAAAAGGGCATATATAAC

Downstream sequence

TGCTAAACAGATGTTTACTTTTAGACTATTATTCCTCTTTATCACTAAAGAACTGAAAAACGGTAACAGGATGTTCTATATTAGTTTTTATAAATCAGAT

Target sequence

ACTGTCTTTTTTGGCATCTTTTTAAATATGTATGCATAACTAGCTTTATGTTCAATAGCGGTCATTAGAATGTCATTCTAGTTGATACAAGAAGTTACAGAAGCAGCAAATTCATCTCTAAATCAAACCATTGCACACCCGTAGAAATAGATCTCCTTTTACAGAGGCTTTGTAGATTTTAGTTATGAAAAGGGCATATATAAC