Basic Information
VIS ID
TVIS30016552
Fusion event
HIV-chr7 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
129456358/129816518 (Hg38)
End
129456252/129816518 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/41504; hsa-mir-10399/Downstream/679593;
Nearest TSS
ENST00000635602/Upstream/31333; ENST00000480018/Downstream/23223;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/30499, chr7-CpG: 53/Downstream/9046
Nearby gene
UBE2H(No orient, 14214)
Upstream sequence
tgaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctgctaaaaatatgaaaaattagctgggtgtg
Downstream sequence
ctggcaggcacctgtgatcccagctactagggagcctgaggcagaagaatcacttgaacccgggaggcagaggttgcagtgagctgagatcaagccattg
Target sequence
ggaggctgaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctgctaaaaatatgaaaaattagctgggtgtg
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate