VISDB Viral Integration Site DataBase

VIS ID

TVIS30016562

Fusion event

HIV-HIPK2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q34

Reference genome

Start

End

139295741/139610827 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-27a-3p ; hsa-mir-181a-5p ; hsa-mir-760 ; hsa-mir-423-5p ; hsa-mir-296-3p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-149-5p ; hsa-mir-222-3p ; hsa-mir-183-5p ; hsa-mir-218-5p ; hsa-mir-141-3p ; hsa-mir-934

Nearest miRNA

hsa-mir-10399/Upstream/566670; hsa-mir-11400/Downstream/2863700;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/86504, chr7-CpG: 16/Downstream/105660

Nearest cancer related gene

HIPK2(TSG, No orient, 0)

Upstream sequence

ttcaacttttatgtaacaaagttgtgagttgtttttcatttgccatggatccacaggttaaaggtcacataacctgagcatgcccagatgaaccaggtat

Downstream sequence

cagatcatgcctcattaccctatgcttataaaacctgacccagccctttgctcagagacactgctttgggaactatctccagtgttctccttacttgtta

Target sequence

gtaacaacaggcagaacctaagtgcctggattgaggcgagtgaatggaatttagaaatggataccacatggcaggatccaggatccaatcagatcgagctgtggcatcactgcatggcaggatccagtcagatcatgcctctgatatcaattcgttgcaagatccaat