VISDB Viral Integration Site DataBase

VIS ID

TVIS30016580

Fusion event

HIV-PRAG1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p23.1

Reference genome

Start

End

8196618/8338767 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1207-5p ; hsa-mir-1910-3p ; hsa-mir-2682-5p ; hsa-mir-3179 ; hsa-mir-3202 ; hsa-mir-34b-5p ; hsa-mir-4423-3p ; hsa-mir-449c-5p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4688 ; hsa-mir-4747-5p ; hsa-mir-4763-3p ; hsa-mir-486-3p ; hsa-mir-5196-5p ; hsa-mir-5681a ; hsa-mir-6511a-5p ; hsa-mir-6743-5p ; hsa-mir-6797-5p ; hsa-mir-6808-5p ; hsa-mir-6879-5p ; hsa-mir-6893-5p ; hsa-mir-885-3p ; hsa-mir-940 ; hsa-mir-9500

Nearest miRNA

hsa-mir-3674/Upstream/249678; hsa-mir-10400/Downstream/709678;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/19508, chr8-CpG: 88/Downstream/47282

Upstream sequence

CCTATTGTTTAGGTAGAATAATGTTGCTGACAGTAAATTTGCAATGGAACCCTCTACTGTGTCATTGCCTATTGAGAAGAAATATTTCCATAGGACTGAA

Downstream sequence

agagagagagagagagagaaagagatagtgagaATGTGTGGTTTAGGACCCATCCTGAGGACAGAAGTAAAAAGCAGGCCTGTACACAGATGGCTCATTA

Target sequence

AAAGGAAGTCATGTGAGTACAAGTCTAAATCCAACATGCTAACGCAAGTCTAAGAGAAACGCAGGAGAGGACACATACACAAAGAATGCTGAAAGGGTGAGAGGTTTTAAATATGACCCATCCAGGCCACAACTATGGAAAAACAAGAGTTCCTTTTTAGGGACATGCCCAGTGGAGGACAGACCCACCCATAGGCCTTAGAGCTTAATCCAAAAAGCAGGCTAGATGGTGGCCTAATGTAGTCTTCATGCTTAA