Basic Information
VIS ID
TVIS30016589
Fusion event
HIV-chr8 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
33379351/33521833 (Hg38)
End
33379371/33521833 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/3564485; hsa-mir-10400/Downstream/7749215;
Nearest TSS
ENST00000518652/Upstream/8232; ENST00000517292/Downstream/45292;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/6825, chr8-CpG: 86/Downstream/44588
Nearby gene
SNORD13(-8255) ; LOC100630919(+1263) ;
Upstream sequence
gtaatcccagcaactcaggagactgaggcaggaggattgcttgaacccaggagtttgaggctgcagtgagccatgaatgcacgattgcactccagcctgg
Downstream sequence
ctctaaaataattaaaaataaataaaaTTGTGAATCTAGTGGTTTATGAATTAAATCTCAAAAATATTTTAGAAGTATTggccgggcgtggtggctcatg
Target sequence
gagacagagtgagaccccaa
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate