VISDB Viral Integration Site DataBase

VIS ID

TVIS30016599

Fusion event

HIV-ARFGEF1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q13.2

Reference genome

Start

End

68139810/67227737 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-877-3p ; hsa-mir-125a-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-3692-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-1228-3p ; hsa-mir-424-3p ; hsa-mir-27b-5p ; hsa-mir-1254 ; hsa-mir-3116 ; hsa-mir-3690 ; hsa-mir-4638-3p ; hsa-mir-4793-3p ; hsa-mir-4797-5p ; hsa-mir-508-5p ; hsa-mir-5586-3p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-7703

Nearest miRNA

hsa-mir-124-1/Upstream/2848480; hsa-mir-10400/Downstream/7320806;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/162524, chr8-CpG: 91/Downstream/115157

Upstream sequence

AGCAGTAAAAATCTACAATTCTTTATTTTTTGTTTTAGAAAAAGTATAGAATAGCATAGATAGGTAAATCCTAAGATTTTCCATAAAGGCATTAAGTATG

Downstream sequence

CTAAAACTATTTCTCAACAAGAAAAACAGATATTTTAAATCAAATTCTTAAAGCCCAGAGCAATCATTTCTAAAAAGAAAAACACCATTCACAGGGTTTT

Target sequence

TCTTCATTAGGATTACACCCAACCTGTAATGGCGACAGAAATAAACGATGCTAATTAATATCAGCAGTAAAAATCTACAATTCTTTATTTTTTGTTTTAGAAAAAGTATAGAATAGCATAGATAGGTAAATCCTAAGATTTTCCATAAAGGCATTAAGTATG