Basic Information
VIS ID
TVIS30016601
Fusion event
HIV-chr8 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
78575844/77663608 (Hg38)
End
78575693/77663608 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/696758; hsa-mir-10400/Downstream/1668580;
Nearest TSS
ENST00000518652/Upstream/212911; ENST00000521879/Downstream/484493;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/662787, chr8-CpG: 46/Downstream/852590
Nearby gene
PEX2(No orient, 662564)
Upstream sequence
gagacctaattacagaactatagaagattttacctccccctatacctgatcaacccaacagggctcctgtataatagcaggaaattacaggtaaaagaac
Downstream sequence
tgaaatattggaccctctttaaggaggttcaaggaaaatccaaagacaacagagaaaacagaaacaaacacagcagaggaaatattagcttctaatacta
Target sequence
ccaactgacatgaagaaagagatatacgtaactcaggctcacttaaagactgagacctaattacagaactatagaagattttacctccccctatacctgatcaacccaacagggctcctgtataatagcaggaaattacaggtaaaagaac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
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