VISDB Viral Integration Site DataBase

VIS ID

TVIS30016603

Fusion event

HIV-DPY19L4 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q22.1

Reference genome

Start

End

95753827/94741923 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-100-5p ; hsa-mir-20a-5p ; hsa-mir-142-3p ; hsa-mir-576-5p ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-3944-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4304 ; hsa-mir-596 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6789-3p ; hsa-mir-4707-3p ; hsa-mir-6752-3p ; hsa-mir-4258 ; hsa-mir-3620-3p ; hsa-mir-4438 ; hsa-mir-4482-3p ; hsa-mir-3679-3p ; hsa-mir-6826-3p ; hsa-mir-609 ; hsa-mir-138-2-3p ; hsa-mir-1283 ; hsa-mir-4531 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-539-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-5680

Nearest miRNA

hsa-mir-12123/Upstream/825804; hsa-mir-10400/Downstream/330988;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/21863, chr8-CpG: 62/Downstream/81098

Upstream sequence

cttttgctgcagaagatttgtaaatagccatttctcattggcgctttggttccttttagtatagaatggaattagaaaatccagtctggcaactaggAGG

Downstream sequence

ACAAGATGATTTTTTGTTATGTCAGAAAGTGCCTGTTACAGGACATTTTGAGTTGCTGTGTACTTTTCTAAAATTCTATTAGGATTTATTTTTAGAAAGA

Target sequence

taagcatctttctgtacttatggatttttattgattcagtgattcattttaattgatttcattgattcagaacattttgatcaatgttcttctgttgctcaaattgtcacacccttggttaataggagtacctttcaggccggctcctgagttcttttgacacaactttgttaatctttgaaagctttcttgttttctggctcaacaaggtgagtaggtttgcacttttgctgcagaagatttgtaaatagccat