VISDB Viral Integration Site DataBase

VIS ID

TVIS30016606

Fusion event

HIV-YWHAZ integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q22.3

Reference genome

Start

End

101961551/100949172 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-1229-3p ; hsa-mir-877-3p ; hsa-mir-455-3p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-340-3p ; hsa-mir-378a-3p ; hsa-let-7b-5p ; hsa-mir-27a-3p ; hsa-mir-671-5p ; hsa-mir-1229-5p ; hsa-mir-1278 ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-410-3p ; hsa-mir-590-3p ; hsa-mir-3150a-3p ; hsa-mir-6763-5p ; hsa-mir-511-3p ; hsa-mir-4737 ; hsa-mir-1294 ; hsa-mir-381-5p ; hsa-mir-202-3p ; hsa-mir-4500 ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-558 ; hsa-mir-6068 ; hsa-mir-545-5p ; hsa-mir-1276 ; hsa-mir-6769b-5p ; hsa-mir-335-3p ; hsa-mir-3127-5p ; hsa-mir-491-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-7106-5p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-6823-5p ; hsa-mir-6856-5p ; hsa-mir-2681-3p ; hsa-mir-6758-5p ; hsa-mir-6079 ; hsa-mir-6828-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-8062 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-5582-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-607 ; hsa-mir-4480 ; hsa-mir-6873-5p ; hsa-mir-651-3p ; hsa-mir-22-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-944 ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-3659 ; hsa-mir-574-5p ; hsa-mir-4280 ; hsa-mir-3163 ; hsa-mir-548p ; hsa-mir-1252-3p ; hsa-mir-3662 ; hsa-mir-5692a ; hsa-mir-1225-5p ; hsa-mir-503-3p ; hsa-mir-3189-5p ; hsa-mir-6769a-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-374c-3p ; hsa-mir-493-3p ; hsa-mir-4650-3p ; hsa-mir-4693-5p ; hsa-mir-934 ; hsa-mir-3166 ; hsa-mir-1827 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-892a ; hsa-mir-4318 ; hsa-mir-2681-5p ; hsa-mir-6083 ; hsa-mir-3915 ; hsa-mir-3973 ; hsa-mir-3928-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-27b-5p ; hsa-mir-7977 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-5693 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-6753-5p ; hsa-mir-3157-5p ; hsa-mir-661 ; hsa-mir-4722-5p ; hsa-mir-3192-5p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-34b-3p ; hsa-mir-193a-3p ; hsa-mir-320a ; hsa-mir-22-5p ; hsa-mir-1233-5p ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-1265 ; hsa-mir-1273h-5p ; hsa-mir-134-3p ; hsa-mir-149-3p ; hsa-mir-17-3p ; hsa-mir-2392 ; hsa-mir-30a-3p ; hsa-mir-30b-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-3121-3p ; hsa-mir-3126-5p ; hsa-mir-3150b-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4419a ; hsa-mir-4434 ; hsa-mir-4510 ; hsa-mir-4516 ; hsa-mir-4537 ; hsa-mir-4648 ; hsa-mir-4654 ; hsa-mir-4728-5p ; hsa-mir-4769-5p ; hsa-mir-4784 ; hsa-mir-5187-5p ; hsa-mir-5584-5p ; hsa-mir-5703 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6728-5p ; hsa-mir-6770-5p ; hsa-mir-6778-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6834-5p ; hsa-mir-6875-5p ; hsa-mir-6883-5p ; hsa-mir-7114-5p ; hsa-mir-765 ; hsa-mir-224-3p ; hsa-mir-490-5p ; hsa-mir-522-3p ; hsa-mir-601 ; hsa-mir-6744-5p

Nearest miRNA

hsa-mir-12123/Upstream/246148; hsa-mir-10400/Downstream/1176260;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/226178, chr8-CpG: 249/Downstream/1244

Nearest cancer related gene

YWHAZ(OG, No orient, 0)

Upstream sequence

AAAATTTAGCATACTCAGCATCAGAGGTAAACTTACAGCCATTAACACATCAGTGTAGCAAAACTTAAAATTTGTTCAGAAGACCCAAATTTCACATGTC

Downstream sequence

TCATATTTCCAGAATCATAATTCATATCAGTTTAATGTAACTCACGTCTTTTTACTTTCATAATACTCTTGTCAAGAGTGATTACATTTTAGCTTTAGTG

Target sequence

AAAATTACTTCCAAAAGCTGCCTCAAAAACTACCCCTAATCTTACCTGATCAAAATCTCAACTCATTTCCAATACCACTAAGTGATCCAAAATTAAGCAGCTTTTCTTCCTTTAGTAAAAGCATTGTTTACAGAGAACATCTGGATTTCTA