VISDB Viral Integration Site DataBase

VIS ID

TVIS30016612

Fusion event

HIV-FAM91A1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.13

Reference genome

Start

End

124795699/123783278 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA8C ; FRA8E

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-106b-5p ; hsa-mir-125b-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-548e-5p ; hsa-mir-595 ; hsa-mir-1910-3p ; hsa-mir-3658 ; hsa-mir-3714 ; hsa-mir-548an ; hsa-mir-6511a-5p ; hsa-mir-3653-3p ; hsa-mir-6885-3p ; hsa-mir-4639-5p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-520f-5p ; hsa-mir-6796-3p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-12123/Upstream/435148; hsa-mir-10400/Downstream/725237;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/14253, chr8-CpG: 34/Downstream/518164

Upstream sequence

aaataaataaataaatagatacatttaaaaataggggtaattatactactgtacaacccacggagttaggaggattaaatgaaaatgtatatataaagta

Downstream sequence

AATGACATGAGCCAGATCTGTAAAGTGAATAACCTATCCTCAGATGTATGTACATTGTAGTTTTTCAGTGTCTCAGTTTTGACCATTTGAATTTTGTCTT

Target sequence

cttggtaatagcctagcacttagtaagcattcaataaatgctattattattTACATAGCTGATAGTGTAGGGAAATAATTAATGTTGTCAAAGACGGGATTTCTAAAATATTTCTAAAAAGAAACCATTGATCATTAAAAGTACCTAGATGACTAGAAATATAGGTAGTACTAAATTAGAA