VISDB Viral Integration Site DataBase

VIS ID

TVIS30016616

Fusion event

HIV-ASAP1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.21

Reference genome

Start

End

131314140/130301581 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-32-5p ; hsa-mir-106b-5p ; hsa-mir-203a-3p ; hsa-mir-136-5p ; hsa-mir-544a ; hsa-mir-136-3p ; hsa-mir-432-5p ; hsa-mir-493-3p ; hsa-mir-208a-3p ; hsa-mir-208b-3p ; hsa-mir-27b-5p ; hsa-mir-3138 ; hsa-mir-3148 ; hsa-mir-4432 ; hsa-mir-4463 ; hsa-mir-4520-3p ; hsa-mir-4635 ; hsa-mir-4720-3p ; hsa-mir-499a-5p ; hsa-mir-6124 ; hsa-mir-6864-5p ; hsa-mir-8071 ; hsa-mir-8087 ; hsa-mir-875-3p

Nearest miRNA

hsa-mir-1204/Upstream/293128; hsa-mir-10400/Downstream/2744900;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/284732, chr8-CpG: 135/Downstream/56260

Upstream sequence

atatagctgcactccatatatagtggttgaatgaatgaaAAAAGTCTGCCTATCTGAATAATCATGGCAGTGGTGTTTTTTTCTTGCTCTATTTCTTTAT

Downstream sequence

GGATAATCTTCAAAGAAGTAGAATGACTGGGTCAGAGTTGTAATGAGAAGACTGTAACCTCCACGATGGCAGGGgtgtccccaaaatctagagcccagag

Target sequence

ATATTGATTAAATATAAATCACATGTTCACTACCCAAAAAACCCCAATTGTCCTTAAACTCTAGCAACCAGAAATAACTAATGTAACCAGAAATATATCCTACAATATTTCCTTATAGGTACataaaatgggatcatcctttctgtgttgttttatatcatgctgttttccagttaatacaacacgactgtctttccatgtcaacagatatGCATATGCATTGTTGTTGAGAGTATCTATTCGTAGATTTCATTA