VISDB Viral Integration Site DataBase

VIS ID

TVIS30016617

Fusion event

HIV-PHF20L1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.22

Reference genome

Start

End

133794348/132781913 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-21-5p ; hsa-mir-769-3p ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-132-3p ; hsa-mir-212-3p ; hsa-mir-6830-3p

Nearest miRNA

hsa-mir-1204/Upstream/2773460; hsa-mir-10400/Downstream/264568;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/6123, chr8-CpG: 126/Downstream/514410

Upstream sequence

TGGACACAGGCCCTGAGAAGCCATCAAGAGGTCAGTCATCTTAGTCCCAGTATTTGCTTTTTGATAATTGGATCTCTCCTACACTGACCAAACATAACTC

Downstream sequence

GATATTCAGTTTTATAATCTCTGGAAGGTAGTAACATCATAAGAATAAAAATGAGTATAGGTGTGTTGATACAGAAGTATATTTGGGGAAGGAGAAAGTT

Target sequence

CTGAGTAGTGTGGGCTGttttaatttttaaaaatattataGCTTTACAATATTTTAAAAACATTTTCTTTTAACTTTTTCAATCATCTGCATAAAGACTTTGACGTGCTAATGTTTACAGCTAGCACAGTCAACTATTTTTTATCTTATTTTCATGTTTTTCACCACAAACTCTGTGCATCCAAACCTT