VISDB Viral Integration Site DataBase

VIS ID

TVIS30016632

Fusion event

HIV-C8orf33 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.3

Reference genome

Start

End

146287442/145061992 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-132-3p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-mir-744-5p ; hsa-mir-324-5p ; hsa-mir-23b-3p ; hsa-mir-222-3p ; hsa-mir-1827 ; hsa-mir-4524a-3p ; hsa-mir-1253 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-5197-3p ; hsa-mir-3674 ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-7975 ; hsa-mir-5571-3p ; hsa-mir-4795-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-4445-5p ; hsa-mir-6766-3p ; hsa-mir-4782-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-126-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-154-5p ; hsa-mir-3159 ; hsa-mir-5586-3p ; hsa-mir-500a-3p ; hsa-mir-6873-3p ; hsa-mir-6804-3p ; hsa-mir-4766-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-6800-3p ; hsa-mir-3925-5p ; hsa-mir-2115-3p ; hsa-mir-4311

Nearest miRNA

hsa-mir-10400/Upstream/270001;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/8982, None/Downstream

Nearby gene

C8orf33(No orient, 5962)

Upstream sequence

ggggaaaaggaacatatgcccagtaagtataattttgagttgccccaactggtggtatacttacggctgcactgactaccataaaggcagccagaattat

Downstream sequence

ACgacccagtagcaaaccgacactgccagtcggcaagggaccaaaaacacctgtgggaacagcaataggtggctctccaggcagcagagaaatatctctg

Target sequence

attacccgtcgtttctggaatttctttttcttttaATAAATTTTCCTACTTAACCCAGTAGCAA