Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene3411039733921693340489493381756733920404339462553394853833924763339269043394197933943984339400123394111433931172339314953395387033954187339343583393441733963982
Basic Information
VIS ID
TVIS30016643
Fusion event
HIV-UBAP2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33963980/33963982 (Hg38)
End
33964037/33963982 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBAP2
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-34a-5p ; hsa-mir-320a ; hsa-let-7f-5p ; hsa-let-7a-5p ; hsa-mir-218-5p ; hsa-mir-335-3p ; hsa-mir-6801-5p
Nearest miRNA
hsa-mir-101-2/Upstream/496047; hsa-let-7a-1/Downstream/1644112;
Nearest TSS
ENST00000422679/Upstream/15016; ENST00000448245/Downstream/25061;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/145680, chr9-CpG: 75/Downstream/84659
Upstream sequence
ATGCTGCGTTACTGCCCAAGGATAGTGAAATGTAATTGAAATCCATACTCTTACAGGTCACTGCAAATCAAGTTATGAATCTTATCCTTGATGGCTCTTG
Downstream sequence
TCTCACTCATCAAAGAgagtattctaatctgttcaacaggtaccagtttttagaaaatttataaattagccttctgagtatacacaagtctttctagttt
Target sequence
GACACTCAAATCACTTCAATTATTCTCATTCTCACGCCCATGTTTACCAAGCTCCCT
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate