Basic Information
VIS ID
TVIS30016648
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
44839980/61632142 (Hg38)
End
44839955/61632142 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9F
Nearest miRNA
hsa-mir-101-2/Upstream/20398307; hsa-let-7a-1/Downstream/9177833;
Nearest TSS
ENST00000422679/Upstream/16266; ENST00000448436/Downstream/27591;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/95722, chr9-CpG: 38/Downstream/2295
Nearby gene
FAM27C(No orient, 150255)
Upstream sequence
tttctcatctgtagatgggaattgtgatgctatctcataggtttgtgagaattaaatgaggccaggtacggtggctcatgccagtaatctcagcactctg
Downstream sequence
ggaggccaaggtaggaggatttcttgagcccaggatttcaagaccagcctgggcaacatgctgaaaccctgtctctacaaaaatacaaaaattagccagg
Target sequence
tcatgccagtaatctcagcactctg
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate