Basic Information
VIS ID
TVIS30016652
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
88529024/85914109 (Hg38)
End
88529115/85914109 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/1944252; hsa-let-7a-1/Downstream/2831727;
Nearest TSS
ENST00000422679/Upstream/120629; ENST00000416045/Downstream/27037;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/108020, chr9-CpG: 100/Downstream/26677
Nearby gene
NAA35(No orient, 27032)
Upstream sequence
acaggaaaaaataaaaaagagaagaacaaggaacacatgagacaaacagaaaacaaatagcaatggtagacttaagcccaaccacattcatagttacatt
Downstream sequence
acatctataatcctagcattttgggagactgagttgggaggattacttgaggccagaagtttgggactagcctgggcagcatagtgaaacAGAAACTAAA
Target sequence
gaatgtaaaagctgaacactccaattataagataaagatgaacagactggatttttaaaaatgtactaacATTGTCAggatgcagtggctc
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate