Basic Information
VIS ID
TVIS30016658
Fusion event
HIV-ERCC6L2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.32
Reference genome
End
98654309/95891980 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/805886; hsa-mir-12126/Downstream/1471574;
Upstream sequence
ttttttaatttcattgtctttattgttgagttgtaagaatttttatgtattttggatactaatccctcatcagatatatgatttgcaaatattttctctc
Downstream sequence
gaaagttaagttttatgaagtccaatctgtttttttatttggttgaacaagttgtaattttaatgtATGTGTAAATAAATTTAAAAAATAGGACTATTAT
Target sequence
attctatagttgtctttttatttgcttgttattttactttgatgcac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate