VISDB Viral Integration Site DataBase

VIS ID

TVIS30016663

Fusion event

HIV-PBX3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q33.3

Reference genome

Start

End

128634508/125872042 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-495-3p ; hsa-mir-615-3p ; hsa-mir-93-5p ; hsa-mir-26b-5p ; hsa-mir-760 ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-320a ; hsa-let-7c-5p ; hsa-mir-98-5p ; hsa-mir-33a-3p ; hsa-mir-144-3p ; hsa-mir-497-5p

Nearest miRNA

hsa-let-7a-1/Upstream/1178244; hsa-mir-12126/Downstream/1818645;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/123651, chr9-CpG: 47/Downstream/17669

Upstream sequence

gtctttttctatgtatgtgtgtaaaaatgcatctttctgtgtatatatcttataatttaaaaACTTGCTTTGAAATACTGATATTGAAGAAGTTTATGGG

Downstream sequence

aatctacatatatcttaccacagcacatgttaaaggattttaaaagattgcaagagaaaaagtaaagattgtcagagggtactaaacaaacaaataggta

Target sequence

GTAACCATTAaaaaaattagattgaatagattgtatagcttccagactagtaaagtaagaaaaatgaaatggtaggggcagaaaaaattagagtaactgattcaatccaaaagaaggcaagaaaggagaagaatagaagaaacaaaagcagggcaaatagaaagtataaaatgatttgggagaaata