Basic Information
VIS ID
TVIS30016664
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
130342689/127580410 (Hg38)
End
130342541/127580410 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/2886612; hsa-mir-12126/Downstream/110277;
Nearest TSS
ENST00000422679/Upstream/1040; ENST00000476182/Downstream/31350;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/10755, chr9-CpG: 36/Downstream/27979
Nearby gene
NIBAN2(No orient, 1421)
Upstream sequence
ccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcactcggccGAGCCTGGTTTTCTACCTATGCTACCTACTTTCTCCAAGGATGCC
Downstream sequence
CTGCTCTGGAAATCTTCAAGGGAATGCCTTTTACCTTAAAGTAGCTCCCCTTCCTCCCTGTCAGGCATCTTTGCATAACTCTGAAGAGTTTTGAAGATGC
Target sequence
accatgttggccaggctggtctcgaactcctggcctcaagtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcactcggccGAGCCTGGTTTTCTACCTATGCTACCTACTTTCTCCAAGGATGCC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate