VISDB Viral Integration Site DataBase

VIS ID

TVIS30016672

Fusion event

HIV-LRRC8A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

131673948/128911463 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-33a-5p ; hsa-let-7b-5p ; hsa-mir-149-5p ; hsa-let-7e-5p ; hsa-mir-191-5p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-1250-3p ; hsa-mir-330-3p ; hsa-mir-6715a-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-4804-5p ; hsa-mir-184 ; hsa-mir-4719 ; hsa-mir-4694-3p

Nearest miRNA

hsa-let-7a-1/Upstream/518749; hsa-mir-12126/Downstream/958142;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/2650, chr9-CpG: 123/Downstream/35611

Upstream sequence

GGGCAGGGTTTTCTCTTGTAGTTTCGGGACAGGCCCACTGAATAGGAAAACTGGAGTCCCCTGGGGAGAAGCCACATTTGGGAAGCACAGAACAAACCCA

Downstream sequence

CTTGCCTGTTAGTGTCATGCCTGCTGGCTGAGGTCACCCCTCAGGAAAGGAGCTGGCGGCAAGCACGCTGTCCCAGAGGAAGGAGACCCTCTGGACACCC

Target sequence

GCCCTTCTTTAATCTGTGGAGGGGGAGACCCTGTGGCTTCCCCATAGCACAGTGCTGCCCTTGATAAGCTGGGACTTCCTCACAGCTCCTGCCATTCCTGCCCTGTCCCGGGTGCTGTGCTGGGGCTGTCCTCCTGGTTGGGGGAGGGTTCAAGCCTCCAGCCTGGCTCCCCATCCTGTCCCCCACCCCCAGCTCCTCCCGCCAAG