VISDB Viral Integration Site DataBase

VIS ID

TVIS30016680

Fusion event

HIV-ABL1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.12

Reference genome

Start

End

133706051/130830796 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-203a-3p ; hsa-mir-29a-3p ; hsa-mir-30a-5p ; hsa-mir-484 ; hsa-mir-342-3p ; hsa-mir-149-5p ; hsa-mir-125b-5p ; hsa-let-7b-5p ; hsa-mir-4723-5p ; hsa-mir-583 ; hsa-mir-1537-5p ; hsa-mir-7854-3p ; hsa-mir-218-5p ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-4511 ; hsa-mir-548b-3p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-423-5p ; hsa-mir-5008-5p ; hsa-mir-3184-5p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-1233-5p ; hsa-mir-17-3p ; hsa-mir-185-3p ; hsa-mir-1908-5p ; hsa-mir-221-5p ; hsa-mir-3621 ; hsa-mir-3622b-5p ; hsa-mir-4300 ; hsa-mir-4418 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4508 ; hsa-mir-455-3p ; hsa-mir-4720-5p ; hsa-mir-4781-5p ; hsa-mir-4799-3p ; hsa-mir-5001-5p ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-5588-5p ; hsa-mir-5591-5p ; hsa-mir-6090 ; hsa-mir-663a ; hsa-mir-6726-5p ; hsa-mir-6778-5p ; hsa-mir-6787-5p ; hsa-mir-6802-5p ; hsa-mir-6815-5p ; hsa-mir-6827-5p ; hsa-mir-6865-5p ; hsa-mir-744-5p ; hsa-mir-762 ; hsa-mir-8073 ; hsa-mir-920

Nearest miRNA

hsa-let-7a-1/Upstream/204433; hsa-mir-126/Downstream/2114911;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/117282, chr9-CpG: 106/Downstream/4077

Nearest cancer related gene

ABL1(OG, No orient, 0)

Upstream sequence

agctactgtttatcgagcaccttctgtgctttgggcactctccctacatgattcctaatcttcataataaccctgtgagataactactcttatgactacc

Downstream sequence

tcccatttttcagatgagaaaattgaggctctgagaggtgaagtcgttgcccatggccccacagtgagtggcagatctgagactcAGCGCTAGCCTTTGT

Target sequence

TACAGAAATAGTCCTCTTTTGGAaataacaatagctactgtttatcgagcaccttctgtgctttgggcactctccctacatgattcctaatcttcataataaccctgtgagataactactcttatgactacc