VISDB Viral Integration Site DataBase

VIS ID

TVIS30016683

Fusion event

HIV-PRRC2B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.13

Reference genome

Start

End

134337481/131462121 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1910-5p ; hsa-mir-1284 ; hsa-mir-877-3p ; hsa-mir-296-3p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-505-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-331-3p ; hsa-mir-181a-5p ; hsa-mir-34a-5p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-497-3p ; hsa-mir-500a-3p ; hsa-mir-3153 ; hsa-mir-4681 ; hsa-mir-6077 ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6804-3p ; hsa-mir-143-3p ; hsa-mir-4251 ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-3135b ; hsa-mir-4446-3p ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-147a ; hsa-mir-4474-3p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-644a ; hsa-mir-198 ; hsa-mir-6880-5p ; hsa-mir-4683 ; hsa-mir-7109-5p ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6747-5p ; hsa-mir-6756-5p ; hsa-mir-4651 ; hsa-mir-608 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-765 ; hsa-mir-4784 ; hsa-mir-4533 ; hsa-mir-3150b-3p ; hsa-mir-5002-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-651-3p ; hsa-mir-7106-5p ; hsa-mir-1252-5p ; hsa-mir-2681-5p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-6771-3p ; hsa-mir-548as-3p ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-3684 ; hsa-mir-3682-5p ; hsa-mir-4699-3p ; hsa-mir-494-3p ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-4290 ; hsa-mir-627-3p ; hsa-mir-548b-3p ; hsa-mir-1273f ; hsa-mir-185-3p ; hsa-mir-28-5p ; hsa-mir-3128 ; hsa-mir-3139 ; hsa-mir-3140-3p ; hsa-mir-31-5p ; hsa-mir-3163 ; hsa-mir-3184-5p ; hsa-mir-3202 ; hsa-mir-3975 ; hsa-mir-423-5p ; hsa-mir-4468 ; hsa-mir-4775 ; hsa-mir-5000-5p ; hsa-mir-5187-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-548t-5p ; hsa-mir-5690 ; hsa-mir-5705 ; hsa-mir-6081 ; hsa-mir-6085 ; hsa-mir-6090 ; hsa-mir-6506-3p ; hsa-mir-658 ; hsa-mir-6728-5p ; hsa-mir-6779-5p ; hsa-mir-6809-5p ; hsa-mir-6813-5p ; hsa-mir-6858-5p ; hsa-mir-708-5p ; hsa-mir-7515 ; hsa-mir-7846-3p

Nearest miRNA

hsa-let-7a-1/Upstream/835758; hsa-mir-126/Downstream/1483586;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/67256, chr9-CpG: 63/Downstream/13236

Upstream sequence

TCATTCACATGTTGAGGTTGCTCCGTATTCCTTTTTTTTTCCTTTTCACCAGTCAAGAAGTAGTGCTGATCAGTATTCAAAAGGTTTCACTTTAACCTAC

Downstream sequence

TCATAACAGCACTGTAAATTAGCTGAACATCAACAGTGATGAAATCTATATACTAAATTTATGTATCCAAGGCATCTTCTGACCAAAtttctttcattct

Target sequence

TATTCAAAAGGTTTCACTTTAACCTAC