VISDB Viral Integration Site DataBase

VIS ID

TVIS30016686

Fusion event

HIV-GTF3C4 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.13

Reference genome

Start

End

135554282/132678604 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-615-3p ; hsa-mir-331-3p ; hsa-mir-320a ; hsa-let-7e-3p ; hsa-mir-571 ; hsa-mir-3173-3p ; hsa-mir-4259 ; hsa-mir-4428 ; hsa-mir-4477b ; hsa-mir-6891-5p ; hsa-mir-875-3p ; hsa-mir-489-3p ; hsa-let-7d-3p ; hsa-mir-3913-3p ; hsa-mir-873-5p ; hsa-mir-1299 ; hsa-mir-642a-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-6846-3p ; hsa-mir-494-3p ; hsa-mir-6128 ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-1251-5p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-1304-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-4308 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-1324 ; hsa-mir-1182 ; hsa-mir-3184-3p ; hsa-mir-3646 ; hsa-mir-130a-5p ; hsa-mir-186-3p ; hsa-mir-188-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-28-5p ; hsa-mir-3139 ; hsa-mir-3606-3p ; hsa-mir-4282 ; hsa-mir-4633-3p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-610 ; hsa-mir-6500-5p ; hsa-mir-6715a-3p ; hsa-mir-6715b-3p ; hsa-mir-6866-3p ; hsa-mir-708-5p

Nearest miRNA

hsa-let-7a-1/Upstream/2052241; hsa-mir-126/Downstream/267103;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/7529, chr9-CpG: 25/Downstream/30063

Upstream sequence

GGAAAAGAATCCATCTCTTCATGCAACACAATTGAGTCAGGAATCACCTCTCCCAGTGTATTGTTTTGGTGGGAATATGAGCACAATAATCGAAAAATGA

Downstream sequence

TTGTCTCCATGACTGCAGACAAACAGAATGGAACAGTCTATACTTGCTCCAGTGACGGAAAGGTGAGGCAGCTGATTCCCATTTTCACAGATGTTGCATT

Target sequence

GTGGCCTTATTGTGGGGAGTGCTTTTGGACCCATAAAAATTCTTCCTGTCAATCTCAAAGCAGTCAAAGGCTATTTCACTTTAAGGCAGCCTGTTATCTTGTGGAAAGAAATGGACCAGTTACCTGTGCACAGTATCAAATGTGTGCCACTTTATCATCCTTACCAGAAGTGTAGTTGCAGCTTAGTAGTGGCTGCAAGAGGCTCTTATGTATTTTGGTGTCTTCTTCTGATCTCCAAAGCAGGGCTGAATGTTC