Basic Information
VIS ID
TVIS30016753
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
39836132/39976878 (Hg38)
End
39836240/39976878 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/139265; hsa-let-7f-2/Downstream/5769279;
Nearest TSS
ENST00000429181/Upstream/128520; ENST00000447651/Downstream/32398;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/154714, chrX-CpG: 314/Downstream/28394
Nearby gene
BCOR(No orient, 74366)
Upstream sequence
ggaaaatagtctggaggtttcttatcaacttaaacatacacctatcctatgacctagccattccactcctaggtatttgcccaagagaaaagaaaatata
Downstream sequence
gtgtatccgtacagtgcaatgcttctcagcaacaagaggggacaaacaaaatgcatgcaacctggatgaatctcaaagtcatcaggctcaataaaagaag
Target sequence
tgtatataaacgtggtgcccaaatgttcatagcagctttatttgtaatagccaaaaattggaaacgacccagatatccagcaaaagatgaagggataaatcaattgta
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate