VISDB Viral Integration Site DataBase

VIS ID

TVIS30016759

Fusion event

HIV-GRIPAP1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

p11.23

Reference genome

Start

End

48842021/48985775 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-449c-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-3614-3p

Nearest miRNA

hsa-mir-1587/Upstream/1398270; hsa-let-7f-2/Downstream/1017373;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/15589, chrX-CpG: 81/Downstream/57209

Upstream sequence

gctgattccatttatatgaagttaaagaacaagcgaaatgaatcttatgttgctagagatcagaataatggttacttctgggggagtactgactttgaag

Downstream sequence

gggtaaaggggaccttctggggtactaaaagtgctttatactttgatctgggtggtggctaTGGTGGCGGGGAGAGAGAGAGAAAAAAAAGAGAGAGACG

Target sequence

cagatctgtgctgccacgtggataaacttacatagtgctgccagaaagaagtcagagacaaagagcagctgattccatttatatgaagttaaagaacaagcgaaatgaatcttatgttgctagagatcagaataatggttacttctgggggagtactgactttgaag