Basic Information
VIS ID
TVIS30016761
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
57089384/57062951 (Hg38)
End
57089234/57062951 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1611369; hsa-mir-105-1/Downstream/6723051;
Nearest TSS
ENST00000429181/Upstream/67124; ENST00000439622/Downstream/57639;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/67340, chrX-CpG: 32/Downstream/58295
Nearby gene
SPIN2B(No orient, 56730)
Upstream sequence
taataccacagacaacactactgagattgagggttctgattgctaaccatcattataccatgtagtgaaagttttgaaaagccgagtgtagaaacacttc
Downstream sequence
actaaattctaaactatccaattctggcaaatggcagtggtgtttagttaaccctagagtactataaacatatattggaggtttcatcacataaatttga
Target sequence
tgctaaattttgttggagattttcagtcactccttctgggagatgtgtgataataccacagacaacactactgagattgagggttctgattgctaaccatcattataccatgtagtgaaagttttgaaaagccgagtgtagaaacacttc
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate