Basic Information
VIS ID
TVIS30016764
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
76645307/77424844 (Hg38)
End
76645285/77424844 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/419343; hsa-mir-105-1/Downstream/1476350;
Nearest TSS
ENST00000429181/Upstream/410312; ENST00000439435/Downstream/22561;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/995704, chrX-CpG: 71/Downstream/22625
Nearby gene
FGF16(No orient, 64339)
Upstream sequence
CAAACTTTGTGTATTTTAAAGAaaatgcagatttcagagccccaccctagataacacattctgaagctgcggaggtggtgcctgggaatctgtatttaaa
Downstream sequence
tgagAGCTGCTTCAGGACCCTTGGATCACACAAGGAGAAACTATTTCCTGTGTCCTGCTATGTCATCTGTACCACTGGATGGACACAACCAAACTCATTT
Target sequence
tgcctgggaatctgtatttaaa
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate