VISDB Viral Integration Site DataBase

VIS ID

TVIS30016765

Fusion event

HIV-ATRX integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q21.1

Reference genome

Start

End

76922885/77667632 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-21-5p ; hsa-mir-342-5p ; hsa-mir-615-3p ; hsa-mir-331-3p ; hsa-mir-17-5p ; hsa-mir-200c-3p ; hsa-mir-200a-3p ; hsa-mir-129-5p ; hsa-mir-6505-5p ; hsa-mir-7850-5p ; hsa-mir-320e

Nearest miRNA

hsa-let-7f-2/Upstream/662131; hsa-mir-105-1/Downstream/1233562;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/219451, chrX-CpG: 54/Downstream/117885

Upstream sequence

CTTTAAAAAATTCCTATTAACTATAAAGATTTGGTTGTTAATTGTAGGAAATCACACAATTTTTCTTCTTTCAAATCCCAGTCTCCAAAGAATATGTCTA

Downstream sequence

CTAAAAAACGGAAAGTCACAATACATAAACCTACTTAATGCATTCTCAAGTTCTGGATTGTCATTAGACTAAGAAATATGATGTACATGAGATAAAATAC

Target sequence

GCAAGTACAAGATCTCATACCATCATTTGGGTTGAACACTAAACAGCCAACAAAAATACAATTCCTAATCTAGTTACTTGAAAGCCTAGTTCAACAACCTGATTTCAGTTTGTGTTTACAAGTTCAAAAAAAGTCTTTAAAAAATTCCTATTAACTATAAAGATTTGGTTGTTAATTGTAGGAAATCACACAATTTTTCTTCTTTCAAATCCCAGTCTCCAAAGAATATGTCTA