Basic Information
VIS ID
TVIS30016766
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78350639/79095142 (Hg38)
End
78350659/79095142 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/193893; hsa-mir-105-1/Downstream/5130610;
Nearest TSS
ENST00000429181/Upstream/149721; ENST00000276077/Downstream/49521;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/955347, chrX-CpG: 27/Downstream/1240079
Nearby gene
GPR174(No orient, 75829)
Upstream sequence
CTCttttttcttttttttttttttgagacaatgtctcactctgttgcccgggctggagtgcagtggtgtgatcttggctcactgcaacctttgcctccag
Downstream sequence
ctaagcctcttgagtagctgggattacaggcacccgccaccacactcagctaatgtttgtatttttagtagggatggggtttcaccatgttggccaggct
Target sequence
ggttcaagcaaatctcctga
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate