VISDB Viral Integration Site DataBase

VIS ID

TVIS30016770

Fusion event

HIV-STAG2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q25

Reference genome

Start

End

123182793/124048738 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-21-5p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-182-5p ; hsa-mir-181a-5p ; hsa-mir-136-5p ; hsa-mir-8081 ; hsa-mir-6869-5p ; hsa-mir-1911-5p ; hsa-mir-3651 ; hsa-mir-6865-3p ; hsa-mir-449b-3p ; hsa-mir-409-3p ; hsa-mir-409-5p

Nearest miRNA

hsa-let-7f-2/Upstream/2677685; hsa-mir-105-1/Downstream/10120640;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/88006, chrX-CpG: 42/Downstream/284097

Upstream sequence

aggctggtctcgaactcctgacctcaagtgatccgtctgtcttggcctccccgagtgctgagattacaggcatgagccactgcacccggccTTCTTTACA

Downstream sequence

ACAGGTGTTCATTTGGTTGTCTTCCTTTACAATTGAAAAGAAATGATGTGTTTTTTTACAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAAT

Target sequence

GTTCTTTAGTGGAAATTTATGAGCATTAGAAAAAAAATCTACTAGCTAAATATTAAAATCCCAATCAAATATTTCAGGTATTAAGGGACTTTATCTACCTGGTAATATAACTGTTAATTTTTCTATATGGTTACTGTTGTCTAGTATAATTCAAAATTCCCCAAAATACTGGGGAATTCTGCTTTTTTTGTGCTTGTAACAACTT