VISDB Viral Integration Site DataBase

VIS ID

TVIS30016779

Fusion event

HIV-ENOX2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q26.1

Reference genome

Start

End

129900692/130767120 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-4666a-5p ; hsa-mir-8068 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-5087 ; hsa-mir-4764-5p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-1265 ; hsa-mir-376c-3p

Nearest miRNA

hsa-let-7f-2/Upstream/9396067; hsa-mir-105-1/Downstream/3402258;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/364921, chrX-CpG: 37/Downstream/135653

Upstream sequence

ACTACTTCATAAGAATGTTGCAAAAGTCAGTAAATATCACAGGCAGTAAACTATATGTTTAGCTCTGTATTAGTTACTGGGTGGGGTGAGGTAGGGTCAA

Downstream sequence

GGATACTGTTGTGAAGGAAAGACAAAATTGTAGCCTTTGTTCATTTTGTGTACCCTTAACTTGCTTTATTATTATTGCTTTTTGAGGTAATTAAGTACCA

Target sequence

ctctgtcacacatcagacctccatatgcacatgggtctatttctgggttattatattctgAAGAATTTTACATTCATTATTTCATGTAGTCTTCACAAtaagtaatttgacattatttcatgtaatctgcaaaatcaccttatgaggtaggtgctattttctccattttacagatttagaaaatgaaagcttagagacactaattactggtaagatcacaaactaatctatggatgtcagctctaagccgaagtt