VISDB Viral Integration Site DataBase

VIS ID

TVIS30016782

Fusion event

HIV-ARHGEF6 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q26.3

Reference genome

Start

End

135852549/136770180 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30c-5p ; hsa-mir-877-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-185-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-1253 ; hsa-mir-6760-5p ; hsa-mir-6873-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-5197-3p ; hsa-mir-888-5p ; hsa-mir-371a-5p

Nearest miRNA

hsa-let-7f-2/Upstream/219220; hsa-mir-105-1/Downstream/1897531;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/2161, chrX-CpG: 63/Downstream/109763

Upstream sequence

ggtataacatttttgaagggcaatttgacattatctatcacaattttacacagtaatcccatttctgtgaagaaagatccttcaagaataatcactgatg

Downstream sequence

acaaactcagaatataaagaaacctcaatctgataaaggccatttaccaaaaacccacatctaacatcgtactcaatggtgaaagactgtctgctctcat

Target sequence

tgcacaaatttctatgtgcatatataacatgatctactgggttttatcccaggaatgcaagattgatttaatatatgaaaatcaattgatgtaatacagcatacaaatataataacaaacaaaaaccagtgatcattttaacagacgtagaaaaagcatttgacaaaatccaactcttttcatgataaaaaacaaaacaaaacacttata