Basic Information
VIS ID
TVIS30016791
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153682799/154454452 (Hg38)
End
153682824/154454452 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRAXE ; FRAXF
Nearest miRNA
hsa-let-7f-2/Upstream/4066; hsa-mir-1184-1/Downstream/314144;
Nearest TSS
ENST00000429181/Upstream/4565; ENST00000495040/Downstream/3829;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/9780, chrX-CpG: 119/Downstream/3302
Nearby gene
FAM50A(No orient, 3797)
Upstream sequence
gtgttataaaggaagtgattggaggcttttaccaggagcaagacataatcttgacttaagttttccagtcactcttgtagcagtgtggcaaagggactgg
Downstream sequence
gaggaggccaccacagctatcctgatgagaggctggtggcttggaccagggtggggacagaatatcagcttctggatagattttggggggaaagccaaca
Target sequence
gggagggcaagcatgggaggccagt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate