Basic Information
VIS ID
TVIS30016795
Fusion event
HIV-chrY integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
14340648/12219943 (Hg38)
End
14340670/12219943 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-2/Upstream/7613715; hsa-mir-12120/Downstream/1259234;
Nearest TSS
ENST00000430575/Upstream/2309145; ENST00000417071/Downstream/442391;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/233169, chrY-CpG: 122/Downstream/200373
Nearby gene
GYG2P1(No orient, 177266)
Upstream sequence
TAATCTGTCTTAACCATCTGTAATATTTTTGGCATACTTTGGCTGTTTCAATTAAGTGGATGCTCCTTTTTACTATCCTATACAAATATTTTTCTTCTGC
Downstream sequence
gtttccctctgtcacccaggctggagtgcagtggtgcgatcttggttcactctggcatcgacttcctaaggtgatcctcccacctcagcctcctgagtat
Target sequence
ATTTTTTGGGGtttttttgaga
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate