Basic Information
VIS ID
TVIS42000002
Fusion event
EBV-BACH2 integration
Validated
Yes
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
B-cell lymphoma (BL)
Quality evaluation
Good
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
End
91006488/90296769 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/11757171; hsa-mir-1202/Downstream/15973;
Nearest CpG islands
chr6-CpG: 227/Target, None/Upstream, None/Downstream
Upstream sequence
tcaactctctaggcaaaggttaactttcaccaattgcaaatcagaaaatctttgaatccacctatgacctagaagccctcatctgccacaccactttgac
Downstream sequence
CGGGCGTGCACGgccgctgctgccgctgctgctgctgctgctgctgctgAGGCGGCGGCGGCTCGGCGCTGTTTGCTCCGCGCCGCGCGGCTTGCGCTCT
Target sequence
TCGCCGGAGAACTTTGCGTCCTTTTCCGCCTCCTCTTCCCCGCGTCTTCCCGGCTCGCAGCCCCCTCCCGGCAGCCGGCGAGGTGGGCAGTTCGTGGGTCACCGAAAGCTCGCGGAGGGGACGCGCATCACATGGCAGCTCGTTCCCAGCCCCCCGAGTGCGCCgggaagggggaggggaaggggcgaggggaggccggggggaaagcgagagcggggcggcggcgggagtgggcaggcggggtggcgagggcgg
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate