Basic Information
VIS ID
TVIS42000005
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
54922
Orient
-
Integrated sequence
CCGTATTGTCTGGCAGCAGGGAGGCCAGCAGGGTGTTCCAGTCATCGGGCGAAGTGGGAGCGGGCTCTGGGCGTGCCCCCAGCGCCTTCCTAATTCTGGC| |CCAGGCCTCATTCGCCTCTCGCGCTCGCCGCTCCTGCCTCTCCTTGTCTTCCTGTTCTCGGAGCTTCTCCTTTTCCTTGCGCCCGGTCTCCATAAGCTGC
Host Sequence
Chromosome
chr1
Reference genome
GRCh37/hg19
Start
142314854
End
(Hg38)
Orient
+
Location type
Intergenic
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
TTCATCTTTGTAACATTTTAGCTTAAAGCAATATTGTATTTTGTTATTATTGTTATAATAATGACTAAAATTTGTTTTCTCCCTTGTTTTTAGTTCTATG
Downstream sequence
taatttcaatattgttgtgtcacaggaaataggaagacccaaagagagagacatgggaaatggctggtcagtggagaagtcagaacacacataacattta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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