Basic Information
VIS ID
TVIS42000008
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
9446
Orient
+
Integrated sequence
TGCTCCAGGATGAAAGCCACTCAGTGTTGGCAAATGTGCACATCCATTTATAAGGATGTCAACTACAGTCAGAGAACCCCTTTGTGTTTGGTCCCCCCCC| |GTGTCACATGTGGAACAGGGCCCAGTTGGCAAGTTGTACCAACCAACTGAAGGGATTACATGCACTGCCCCGCGGGAAATACGTCCTACCCAGGAACCCG
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
78120547/77654204 (Hg38)
End
78120547/77654204 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/387914; hsa-mir-1185-1/Downstream/16294022;
Nearest TSS
ENST00000550708/Upstream/37431; ENST00000554074/Downstream/50248;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/11885, chr14-CpG: 47/Downstream/53507
Nearby gene
COX6CP11(-1149) ;
Upstream sequence
ttttatatattactagatttaattcactaaaattttgttaaggacttatgcccaagagggatattagtctgcagtattcttttctggtaacatctcgaat
Downstream sequence
cccgggtcacctcgggcccatgatttagcccctctcttctcctttgccacatctgtaaaacgaggatgacagcagcgcctggcgttgagggttactgtga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate