VISDB Viral Integration Site DataBase

VIS ID

TVIS42000009

Fusion event

EBV-SLC43A2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

9446

Orient

+

Integrated sequence

TGCTCCAGGATGAAAGCCACTCAGTGTTGGCAAATGTGCACATCCATTTATAAGGATGTCAACTACAGTCAGAGAACCCCTTTGTGTTTGGTCCCCCCCC| |GTGTCACATGTGGAACAGGGCCCAGTTGGCAAGTTGTACCAACCAACTGAAGGGATTACATGCACTGCCCCGCGGGAAATACGTCCTACCCAGGAACCCG

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

1478649/1575355 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5008-5p ; hsa-mir-4258 ; hsa-mir-4257 ; hsa-mir-4279 ; hsa-mir-377-3p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-1281 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4485-5p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-1228-3p ; hsa-mir-4284 ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6516-5p ; hsa-mir-1238-3p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-3124-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-4303 ; hsa-mir-6832-3p ; hsa-mir-6770-5p ; hsa-mir-3182 ; hsa-mir-1253 ; hsa-mir-6761-5p ; hsa-mir-4329 ; hsa-mir-4251 ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-877-3p ; hsa-mir-1343-3p ; hsa-mir-139-3p ; hsa-mir-493-3p ; hsa-mir-5091 ; hsa-mir-564 ; hsa-mir-6742-3p ; hsa-mir-6783-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-1304-3p ; hsa-mir-150-5p ; hsa-mir-3199 ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-4438 ; hsa-mir-5095 ; hsa-mir-562 ; hsa-mir-5697 ; hsa-mir-6814-5p ; hsa-mir-7151-3p ; hsa-mir-8052

Nearest miRNA

hsa-mir-3183/Upstream/552796; hsa-mir-10226/Downstream/138548;

Nearest TSS

Nearest CpG islands

chr17-CpG: 45/Target, None/Upstream, None/Downstream

Upstream sequence

gttcctcatttacagggctcaatacccacaggtgcctagtgcctactgtaccggacagcacagacagaaagcaacttgtttaactttccatcatcgcaga

Downstream sequence

CCGGGTCCCCGGGGGGCGGCAGAGCAAAGTCAGGGCAGCCCCTGCGTTCGGCAGGAGAAAACGCGCGTGTCCGGGGCCCTCTCCCGTCCTTCCACCACAG